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  UCSC Genome Browser Project Team
  UCSC Genome Browser Project Staff:
  • Jim Kent: Research Scientist, co-director of UCSC Genome Browser project. Design and implementation of the Genome Browser and the BLAT sequence search tool. Author of the the UCSC Known Genes annotations, the Gene Sorter, VisiGene, Genome Graphs, chaining and netting programs, the In Silico PCR tool, and the GigAssembler. Implementation of many Genome Browser annotation tracks, including FPC contigs, assembly, gap, coverage, known genes, full mRNA, spliced ESTs, human ESTs, Genscan genes, non-human mRNA and EST, and mouse BLAT.
  • Galt Barber: Genome Browser engineering, Cow Browser, VisiGene.
  • Hiram Clawson: Genome Browser engineering, Worm Browser, Human Browser, Mouse Browser, Opossum Browser, "wiggle" track for quantitative analysis along chromosomes, mirror and licensing technical support, modENCODE.
  • Mark Diekhans: Graduate student, MGC project lead, common human gene set, and incremental updates of cDNA data.
  • Rachel Harte: Genome Browser engineering and QA, ENCODE, Zebrafish Browser, Tetraodon Browser, CCDS and MGC curation.
  • Angie Hinrichs: Genome Browser engineering, Drosophila Browsers, A. gambiae Browser, Chicken Browser, Honey Bee Browser, Dog Browser, Table Browser, modENCODE.
  • Fan Hsu: Director of Proteomics, Genome Browser engineering, Proteome Browser, Mouse Browser, Human Browser, Known Genes tracks.
  • Donna Karolchik: Genome Browser project and engineering management, documentation, web content, Genome Browser licensing, mailing list support, training coordinator.
  • Robert Kuhn: Genome Browser QA manager, project outreach.
  • Andy Pohl: Genome Browser engineering, hgLiftOver, MGC.
  • Thomas Pringle: Technical advisor on Proteome Browser project, avid Genome Browser user, constant source of ideas for improving and expanding project functionality.
  • Brooke Rhead: Genome Browser QA.
  • Kate Rosenbloom: Genome Browser engineering, Fugu Browser, Chimp Browser, NISC project, ENCODE project, multiz/humor alignments.
  • Kayla Smith: Genome Browser QA.
  • Archana Thakkapallayil: Genome Browser QA.
  • Ann Zweig: Genome Browser QA.

Post-docs and Graduate Students (Browser-related support):

  • Andy Kern: Post-doctoral fellow - Population genetics and human variation.
  • Robert Baertsch: Graduate student - Synteny, pseudogenes, orthology; Genome Browser support.
  • Craig Lowe: Graduate student - Contribution of transposons to the evolution of the human genome.
  • Brian Raney: Graduate student, Ciona Browser, Genome Browser engineering.
  • Krishna Roskin: Graduate student - Phylogenetic analysis, Genome Browser database support, early Table Browser support.
  • Bernard Suh. Graduate student - Reconstruction of chromosomal rearrangements.

Systems Administration Staff:

  • Jorge Garcia: Systems administrator. Co-designer of the KiloKluster. Chief hardware bug finder. Web, mail, laptop and general systems support.
  • Victoria Lin: Systems administrator.
  • Chester Manuel: Systems administrator.
  • Erich Weiler: Systems administrator.

Center for Biomolecular Science and Engineering (CBSE) Staff:

We gratefully acknowledge the help of former UCSC genome team members Gill Bejerano, Mathieu Blanchette, Trevor Bruen, Brenna Candelaria, Mike Chalup, Chad Chen, Ron Chao, Jenny Draper, Phoenix Eagleshadow, Terry Furey, Patrick Gavin, Jennifer Jackson, Scot Kennedy, Nick Littlestone, Yontao Lu, Crystal Lynch, Jakob Pedersen, Katie Pollard, Sanja Rogic, Matt Schwartz, Chuck Sugnet, Ali Sultan-Qurraie, Adam Siepel, Paul Tatarksy, Daryl Thomas, Aaron Tomb, Heather Trumbower, Sandra Walton, Ryan Weber, Wei Wu, Matt Xia, Chen-Hsiang Yeang, and Degui Zhi.