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UCSC Genome Browser Project Staff:
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Jim Kent: Research Scientist,
co-director of UCSC Genome Browser project.
Design and implementation of the
Genome Browser and the
BLAT
sequence search tool. Author of the
the UCSC Known Genes annotations,
the Gene Sorter,
VisiGene,
Genome Graphs, chaining
and netting programs, the In
Silico PCR tool, and the
GigAssembler.
Implementation of many Genome Browser annotation tracks,
including FPC contigs, assembly, gap, coverage,
known genes, full mRNA, spliced ESTs, human ESTs,
Genscan genes, non-human mRNA and EST, and mouse BLAT.
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Galt Barber:
Genome Browser engineering, Cow Browser, VisiGene.
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Hiram Clawson:
Genome Browser engineering, Worm Browser, Human
Browser, Mouse Browser, Opossum Browser, "wiggle" track
for quantitative analysis along chromosomes, mirror and
licensing technical support, modENCODE.
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Mark Diekhans:
Graduate student, MGC project lead, common human gene
set, and incremental updates of cDNA data.
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Rachel Harte:
Genome Browser engineering and QA, ENCODE, Zebrafish
Browser, Tetraodon Browser, CCDS and MGC curation.
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Angie Hinrichs:
Genome Browser engineering, Drosophila Browsers,
A. gambiae Browser, Chicken Browser, Honey Bee
Browser, Dog Browser, Table Browser, modENCODE.
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Fan Hsu:
Director of Proteomics, Genome Browser engineering,
Proteome Browser, Mouse Browser, Human Browser, Known
Genes tracks.
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Donna Karolchik:
Genome Browser project and engineering management,
documentation, web
content, Genome Browser licensing, mailing list support,
training coordinator.
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Robert Kuhn:
Genome Browser QA manager, project outreach.
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Andy Pohl:
Genome Browser engineering, hgLiftOver, MGC.
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Thomas Pringle:
Technical advisor on Proteome Browser
project, avid Genome Browser user, constant source of ideas
for improving and expanding project functionality.
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Brooke Rhead: Genome Browser QA.
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Kate Rosenbloom:
Genome Browser engineering, Fugu Browser, Chimp Browser,
NISC project, ENCODE project, multiz/humor alignments.
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Kayla Smith:
Genome Browser QA.
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Archana Thakkapallayil:
Genome Browser QA.
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Ann Zweig:
Genome Browser QA.
Post-docs and Graduate Students (Browser-related support):
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Andy Kern:
Post-doctoral fellow - Population genetics and human
variation.
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Robert Baertsch:
Graduate student - Synteny, pseudogenes, orthology;
Genome Browser support.
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Craig Lowe:
Graduate student - Contribution of transposons to the
evolution of the human genome.
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Brian Raney:
Graduate student, Ciona Browser, Genome Browser engineering.
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Krishna Roskin:
Graduate student - Phylogenetic analysis, Genome
Browser database support, early Table Browser support.
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Bernard Suh.
Graduate student - Reconstruction of chromosomal
rearrangements.
Systems Administration Staff:
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Jorge Garcia:
Systems administrator. Co-designer of the KiloKluster.
Chief hardware bug finder. Web, mail, laptop and
general systems support.
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Victoria Lin:
Systems administrator.
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Chester Manuel:
Systems administrator.
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Erich Weiler:
Systems administrator.
Center for Biomolecular Science and Engineering
(CBSE) Staff:
We gratefully acknowledge the help of former UCSC genome
team members Gill Bejerano, Mathieu Blanchette, Trevor
Bruen, Brenna Candelaria, Mike Chalup, Chad
Chen, Ron Chao, Jenny Draper, Phoenix Eagleshadow,
Terry Furey, Patrick Gavin,
Jennifer Jackson, Scot Kennedy, Nick Littlestone, Yontao
Lu, Crystal
Lynch, Jakob Pedersen, Katie Pollard, Sanja Rogic, Matt
Schwartz, Chuck
Sugnet, Ali Sultan-Qurraie, Adam Siepel, Paul Tatarksy,
Daryl Thomas, Aaron Tomb, Heather Trumbower, Sandra Walton,
Ryan Weber, Wei Wu, Matt Xia, Chen-Hsiang Yeang, and Degui
Zhi.
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